Motif Finding with Gibbs Sampling (F#)

The Problem "Motif finding is a problem of finding common substrings of specified length in a set of strings. In bioinformatics, this is useful for finding transcription binding sites" (recap here). The problem is succinctly stated on Rosalind. Given a set of strings DNA of size t, find "most common" substrings of length k. "Most common" means, that substrings … Continue reading Motif Finding with Gibbs Sampling (F#)

Modelling Stochastically Independent Processes with F# Computation Expressions: Part 2

Code for this entry: here. In this first part, we started shamelessly plagiarizing creatively reproducing a Clojure monad that does a great job describing stochastically independent processes. After a few trials I became convinced, that the approach in the blog post mentioned above was indeed optimal: a "natural" approach of modelling an event as a … Continue reading Modelling Stochastically Independent Processes with F# Computation Expressions: Part 2